ENCODE
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ENCODE - EN-TEx
Aggregation of AS Events Across Tissues and Assays ... AS Catalog ... Structural Variants ... Decoration of cCREs from ENCODE ... Tissue Specificity ... Relating Encyclopedia …
ENCSR778UBR – ENCODE
Jan 26, 2017 · Attribution Lab Michael Snyder, Stanford Award U54HG006996 (Michael Snyder, Stanford) Project ENCODE External resources GEO:GSE106034 References …
Search – ENCODE
Project: ENCODE Experiment ENCSR817BUE released Audit error1Audit not_compliant1Audit warning1 polyA plus RNA-seq in GM19204 Homo sapiens GM19204 Lab: Erez Aiden, Baylor …
Getting Started – ENCODE
The ENCODE Portal, developed and maintained by the Data Coordination Center (ENCODE DCC), is the canonical source for all experimental metadata and data from ENCODE and …
Data standards – ENCODE
The ENCODE Consortium has adopted shared experimental guidelines for the most common ENCODE assays. The guidelines have evolved over time as technologies have changed, and …
The ENCODE REST API
In the GET example above, we use the ENCODE REST API to retrieve an individual object using its ENCODE accession number. You can also search for objects programmatically and get the …
Software Tools – ENCODE
Software tools and resources for applying and analyzing ENCODE data: On this page are brief descriptions of software and resources that others might find useful for analyzing and using …
publications – ENCODE
The Encyclopedia of DNA Elements (ENCODE) project has established a genomic resource for mammalian development, profiling a diverse panel of mouse tissues at 8 developmental …
HiC Data Standards and Processing Pipeline – ENCODE
Current Standards The experiment must pass routine metadata audits in order to be released. The chromatin interaction (.hic) is checked for the following quality metrics: Intact Hi-C …